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Chromosome
1
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7
8
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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322 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ABCA6
ENSSSCG00000017256
ENSG00000154262
ATP binding cassette subfamily A member 6
Tissue enhanced
Detected in many
liver:
74.8
ABCA8
ENSSSCG00000026473
ENSG00000141338
ATP binding cassette subfamily A member 8
Tissue enhanced
Detected in many
liver:
61.6
vagus nerve:
33.1
ABCA9
ENSSSCG00000017257
ENSG00000154258
ATP binding cassette subfamily A member 9
Tissue enhanced
Detected in many
vagus nerve:
43.9
ABCC9
ENSSSCG00000000571
ENSG00000069431
ATP binding cassette subfamily C member 9
Tissue enhanced
Detected in many
heart:
57.6
skeletal muscle:
40.3
ABHD15
ENSSSCG00000017789
ENSG00000168792
Abhydrolase domain containing 15
Tissue enhanced
Detected in many
adipose tissue:
25.8
ACAA1
ENSSSCG00000011250
ENSG00000060971
Acetyl-CoA acyltransferase 1
Tissue enhanced
Detected in all
adipose tissue:
72.9
liver:
58.5
ACE
ENSSSCG00000017296
ENSG00000159640
Angiotensin-converting enzyme isoform 1 precursor
Tissue enhanced
Detected in many
testis:
102.1
ACE2
ENSSSCG00000012138
ENSG00000130234
Angiotensin-converting enzyme 2 precursor
Group enriched
Detected in some
adipose tissue:
37.4
aorta:
16.8
kidney:
31.1
small intestine:
50.4
ACER2
ENSSSCG00000034213
ENSG00000177076
Alkaline ceramidase 2
Tissue enhanced
Detected in many
adipose tissue:
35.7
male glands:
43.4
ACKR2
ENSSSCG00000031154
ENSG00000144648
Atypical chemokine receptor 2
Tissue enhanced
Detected in many
mesothelial tissue:
23.7
synovial tissue:
69.1
ACVRL1
ENSSSCG00000000232
ENSG00000139567
Activin A receptor like type 1
Low tissue specificity
Detected in many
ADAM15
ENSSSCG00000006533
ENSG00000143537
ADAM metallopeptidase domain 15
Low tissue specificity
Detected in all
ADAMTS1
ENSSSCG00000012026
ENSG00000154734
A disintegrin and metalloproteinase with thrombospondin motifs 1 precursor
Tissue enhanced
Detected in many
aorta:
54.6
gallbladder:
47.1
mesothelial tissue:
50.9
ADAMTS9
ENSSSCG00000011496
ENSG00000163638
ADAM metallopeptidase with thrombospondin type 1 motif 9
Tissue enhanced
Detected in many
mesothelial tissue:
68.1
ADCY4
ENSSSCG00000001988
ENSG00000129467
Adenylate cyclase 4
Tissue enhanced
Detected in many
lymphoid tissue:
44.9
ADGRL4
ENSSSCG00000003762
ENSG00000162618
Adhesion G protein-coupled receptor L4
Low tissue specificity
Detected in many
ADIPOQ
ENSSSCG00000039103
ENSG00000181092
Adiponectin precursor
Group enriched
Detected in many
adipose tissue:
213.0
aorta:
64.3
bone marrow:
147.9
ADIPOR2
ENSSSCG00000000757
ENSG00000006831
Adiponectin receptor protein 2
Tissue enhanced
Detected in all
adipose tissue:
72.1
bone marrow:
55.2
ADRA2B
ENSSSCG00000008122
ENSG00000274286
Alpha-2B adrenergic receptor
Low tissue specificity
Detected in many
ADRB2
ENSSSCG00000038598
ENSG00000169252
Beta-2 adrenergic receptor
Low tissue specificity
Detected in many
AFAP1L1
ENSSSCG00000014431
ENSG00000157510
Actin filament-associated protein 1-like 1
Tissue enriched
Detected in many
lymphoid tissue:
72.8
AGTR1
ENSSSCG00000011695
ENSG00000144891
Type-1 angiotensin II receptor
Tissue enhanced
Detected in many
adipose tissue:
29.1
ANGPT4
ENSSSCG00000007198
ENSG00000101280
Angiopoietin 4
Tissue enhanced
Detected in all
penis:
29.1
ANKRD53
ENSSSCG00000031976
ENSG00000144031
Ankyrin repeat domain 53
Tissue enhanced
Detected in many
adipose tissue:
11.9
kidney:
26.0
testis:
24.9
ARAP3
ENSSSCG00000014391
ENSG00000120318
ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3
Low tissue specificity
Detected in many
ARHGAP31
ENSSSCG00000026224
ENSG00000031081
Rho GTPase activating protein 31
Low tissue specificity
Detected in many
ARHGEF15
ENSSSCG00000028048
ENSG00000198844
Rho guanine nucleotide exchange factor 15
Low tissue specificity
Detected in many
ARHGEF3
ENSSSCG00000030359
ENSG00000163947
Rho guanine nucleotide exchange factor 3
Low tissue specificity
Detected in all
ARL14EPL
ENSSSCG00000014222
ENSG00000268223
ADP ribosylation factor like GTPase 14 effector protein like
Tissue enhanced
Detected in many
adipose tissue:
10.6
mouth:
10.9
vagus nerve:
20.3
ARL15
ENSSSCG00000016894
ENSG00000185305
ADP ribosylation factor like GTPase 15
Low tissue specificity
Detected in all
BCAM
ENSSSCG00000020657
ENSG00000187244
Basal cell adhesion molecule (Lutheran blood group)
Tissue enhanced
Detected in all
adipose tissue:
141.6
aorta:
88.3
BCL2L1
ENSSSCG00000035357
ENSG00000171552
Bcl-2-like protein 1
Low tissue specificity
Detected in all
BCL6B
ENSSSCG00000017927
ENSG00000161940
B cell CLL/lymphoma 6B
Tissue enhanced
Detected in many
mesothelial tissue:
30.0
BHLHA9
ENSSSCG00000017802
ENSG00000205899
Basic helix-loop-helix family member a9
Group enriched
Detected in some
adipose tissue:
16.9
bone marrow:
5.3
C11orf96
ENSSSCG00000039182
ENSG00000187479
Chromosome 11 open reading frame 96
Tissue enhanced
Detected in many
aorta:
137.7
gallbladder:
125.2
CA3
ENSSSCG00000006141
ENSG00000164879
Carbonic anhydrase 3
Tissue enriched
Detected in many
skeletal muscle:
324.2
CALCRL
ENSSSCG00000016031
ENSG00000064989
Calcitonin gene-related peptide type 1 receptor precursor
Tissue enhanced
Detected in many
lung:
51.7
CALHM5
ENSSSCG00000031898
ENSG00000178033
Calcium homeostasis modulator family member 5
Low tissue specificity
Detected in all
CCL14
ENSSSCG00000034722
ENSG00000276409
C-C motif chemokine 14 precursor
Tissue enhanced
Detected in many
adipose tissue:
73.8
synovial tissue:
65.8
CCM2L
ENSSSCG00000007239
ENSG00000101331
CCM2 like scaffolding protein
Low tissue specificity
Detected in all
CD34
ENSSSCG00000039946
ENSG00000174059
Hematopoietic progenitor cell antigen CD34 precursor
Low tissue specificity
Detected in many
CD93
ENSSSCG00000007116
ENSG00000125810
CD93 molecule
Low tissue specificity
Detected in many
CDC45
ENSSSCG00000010122
ENSG00000093009
Cell division cycle 45
Tissue enhanced
Detected in many
cartilage:
31.2
CDH5
ENSSSCG00000035772
ENSG00000179776
Cadherin-5 precursor
Low tissue specificity
Detected in many
CH25H
ENSSSCG00000010449
ENSG00000138135
Cholesterol 25-hydroxylase
Tissue enhanced
Detected in many
epididymis:
43.9
ovary:
26.5
CHST13
ENSSSCG00000011625
ENSG00000180767
Carbohydrate sulfotransferase 13
Group enriched
Detected in many
adipose tissue:
22.2
bone marrow:
23.7
liver:
27.4
CIDEA
ENSSSCG00000024644
ENSG00000176194
Cell death activator CIDE-A
Tissue enhanced
Detected in many
adipose tissue:
75.3
aorta:
37.8
bone marrow:
43.0
cornea:
28.4
CIDEC
ENSSSCG00000011557
ENSG00000187288
Cell death activator CIDE-3
Tissue enhanced
Detected in all
adipose tissue:
91.0
aorta:
46.0
bone marrow:
48.0
CITED2
ENSSSCG00000004142
ENSG00000164442
Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2
Low tissue specificity
Detected in all
CLEC14A
ENSSSCG00000023760
ENSG00000176435
C-type lectin domain containing 14A
Low tissue specificity
Detected in many
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